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| author |   David Seifert <soap@gentoo.org> | 2020-11-01 19:36:24 +0100 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2020-11-01 19:36:24 +0100 |
| commit | c76141a9ed378795deac9e8fdd8f9ff5e6b1b91b (patch) | |
| tree | 286b98a7462614aedaf9131643130db4d5818006 /sci-biology/clustalw-mpi/files/clustalw-mpi-0.13-makefile.patch | |
| parent | sci-biology/lagan: Port to EAPI 7 (diff) | |
| download | gentoo-c76141a9ed378795deac9e8fdd8f9ff5e6b1b91b.tar.gz gentoo-c76141a9ed378795deac9e8fdd8f9ff5e6b1b91b.tar.bz2 gentoo-c76141a9ed378795deac9e8fdd8f9ff5e6b1b91b.zip | |
sci-biology/clustalw-mpi: Port to EAPI 7
* Rename USE flags to avoid underscore
* Fix building against GCC 10 / -fno-common
Closes: https://bugs.gentoo.org/695122
Closes: https://bugs.gentoo.org/706960
Package-Manager: Portage-3.0.8, Repoman-3.0.2
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology/clustalw-mpi/files/clustalw-mpi-0.13-makefile.patch')
| -rw-r--r-- | sci-biology/clustalw-mpi/files/clustalw-mpi-0.13-makefile.patch | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/sci-biology/clustalw-mpi/files/clustalw-mpi-0.13-makefile.patch b/sci-biology/clustalw-mpi/files/clustalw-mpi-0.13-makefile.patch new file mode 100644 index 000000000000..6e36061cbb39 --- /dev/null +++ b/sci-biology/clustalw-mpi/files/clustalw-mpi-0.13-makefile.patch @@ -0,0 +1,23 @@ + Makefile | 6 +++--- + 1 files changed, 3 insertions(+), 3 deletions(-) + +diff --git a/Makefile b/Makefile +index f2107ce..835232b 100644 +--- a/Makefile ++++ b/Makefile +@@ -25,12 +25,12 @@ TREES_FLAG = -DSERIAL_NJTREE + PAIRALIGN_FLAG = -DDYNAMIC_SCHEDULING_PAIRALIGN + #PAIRALIGN_FLAG = -DSTATIC_SCHEDULING_PAIRALIGN + +-CFLAGS = -c -O3 ++CFLAGS += -c + #CFLAGS = -c -O3 -funroll-all-loops +-LFLAGS = -lm ++LIBS = -lm + + clustalw-mpi: $(OBJECTS) +- $(CC) -o $@ $(OBJECTS) $(LFLAGS) ++ $(CC) $(LDFLAGS) -o $@ $(OBJECTS) $(LIBS) + + interface.o : interface.c $(HEADERS) param.h + $(CC) $(CFLAGS) $*.c |